Cross-species regulatory sequence activity prediction. PLoS Comp Bio 7/2020.

get_models.sh - Download the saved TensorFlow models for human and mouse targets

Download the training/validation/test TFRecords (319 Gb) from https://console.cloud.google.com/storage/browser/basenji_barnyard/data. Note that due to very large costs, we had to switch this to requester pays.

Scikit-learn random forest SNP classifiers for Mendelian disease and GWAS complex traits available from https://console.cloud.google.com/storage/browser/basenji_barnyard/sad/classifiers/. Restore models using joblib.load.

All 1000 Genomes variant scores for human and mouse available from https://console.cloud.google.com/storage/browser/basenji_barnyard/sad/human/ and https://console.cloud.google.com/storage/browser/basenji_barnyard/sad/mouse/.

Autism variant scores available from https://console.cloud.google.com/storage/browser/basenji_barnyard/sad/autism/.