The Millennium Age of Animation begins.
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2000
- 3-2-1 Penguins!
- Action Man (2000)
- Argai: The Prophecy
- A Miss Mallard Mystery
- Aqua Teen Hunger Force
- As Told by Ginger: Had most of its run in this decade.
- Baby Blues
- The Baskervilles
- The Brak Show
- Buzz Lightyear of Star Command
- I Cartoni dello Zecchino d'Oro
- Clerks: The Animated Series
- Cyberworld
- Dan Dare: Pilot of the Future
- D'Myna Leagues
- Dora the Explorer (2000-2015)
- Eckhart
- Ethelbert the Tiger
- Fantomette (2000-2001)
- For Better or for Worse
- George Shrinks
- Generation O!
- God, the Devil and Bob
- Grizzly Tales for Gruesome Kids
- Harvey Birdman, Attorney at Law
- Hopla
- Hoota & Snoz
- The Intruder (2000). Toonami Immersion Event.
- It's the Piped Piper, Charlie Brown
- Jackie Chan Adventures
- Jason and the Heroes of Mount Olympus
- Kong: The Animated Series
- The Lampies
- Maggie and the Ferocious Beast
- The Magic Key
- Mamemo
- Marsupilami
- Marvin the Tap-Dancing Horse
- Max Steel
- The New Adventures of Ocean Girl (2000)
- Pelswick
- Pigs Next Door
- Poochini
- Rainbow Fish
- Seven Little Monsters
- Sheep in the Big City
- Spy Groove
- Static Shock
- Symfollies
- Teacher's Pet (2000)
- Timothy Goes to School
- Titanic: The Legend Goes On
- Treasure
- The Twins (2000)
- The Ugly Duckling 2000
- Uncle Gus
- The Weekenders
- What About Mimi?
- Wheel Squad
- Wunschpunsch
- X-Men: Evolution
2001
- 2DTV
- Aaagh! It's the Mr. Hell Show!
- Alienators: Evolution Continues
- Animated Tales of the World
- Anne of Green Gables: The Animated Series
- The Bellflower Bunnies
- Belphégor
- Binka
- Braceface
- The Canterville Ghost (2001)
- Capelito
- Capertown Cops
- Cocco Bill
- Chris Colorado
- Committed
- Les Enquêtes de Prudence Petitpas
- The Fairly OddParents!: Started as a series of shorts on Oh Yeah! Cartoons in 1998, but became a regular series in 2001.
- Gadget and the Gadgetinis
- Gloria's House
- Grim & Evil
- The Grim Adventures of Billy & Mandy
- Evil Con Carne (spun off into its own series in 2003)
- House of Mouse
- Invader Zim
- John Callahan's Quads!
- Justice League
- The Legend of Tarzan
- Lloyd in Space
- Mire Bala Kale Hin (2001-2003)
- The Mummy: The Animated Series (2001-2003)
- The New Adventures of Lucky Luke
- The Oblongs
- Oswald (2001–2003)
- Pecola
- The Proud Family
- The Proud Family Movie (2005)
- The Ripping Friends
- Sagwa, the Chinese Siamese Cat
- Samurai Jack
- Sealab 2021
- Simplemente Rita
- Sitting Ducks
- Stanley
- Steady Eddie
- Stick Girl
- Time Squad
- Tiny Planets (2001-2002)
- The Tool Street Gang
- Tootletubs and Jyro
- Ultimate Book of Spells
- Undergrads
- Untalkative Bunny
- What's with Andy?
- Xcalibur
- Yvon of the Yukon
- The Zeta Project
2002
- 3-South
- The Adventures of Jimmy Neutron, Boy Genius
- Angelina Ballerina
- Audrey and Friends
- Baby Looney Tunes
- Bandolero (Animation)
- The Berenstain Bears (2002)
- Butt-Ugly Martians
- ChalkZone
- Clone High (2002-2003)
- Codename: Kids Next Door
- Cone Control
- The Cramp Twins
- Cyberchase
- Daft Planet
- Doodlez
- Dragon Hill
- Edward
- Engie Benjy (2002-2004)
- Fillmore!
- Fred the Caveman
- Girlstuff/Boystuff
- Globehunters: An Around the World in 80 Days Adventure
- God Rocks!
- Groove Squad
- Harold and the Purple Crayon
- Henry's World
- Horrible Histories
- I Spy (2002)
- Kaput & Zosky
- Kim Possible
- The Lost World
- Max and Ruby
- Mission Odyssey: (2002-2003)
- Moville Mysteries (2002-2003)
- Mr. Bean: The Animated Series
- ¡Mucha Lucha! (2002-2005)
- My Life as a Teenage Robot
- Olliver's Adventures (2002-2005)
- Ozzy & Drix
- Phantom Investigators
- Pig City
- Prezzemolo
- RoboRoach
- Scruff
- Simon in the Land of Chalk Drawings (2002)
- Spaced Out
- Stargate Infinity
- Teamo Supremo
- Totally Spies!
- Wallace & Gromit's Cracking Contraptions
- Whatever Happened to... Robot Jones?
- Yoko! Jakamoko! Toto!
2003
- The Adventures of Little Brown Bear
- All Grown Up!
- The Aquaman & Friends Action Hour
- Batman: Mystery of the Batwoman
- Bounty Hamster
- Charlotte's Web 2: Wilbur's Great Adventure
- Chilly Beach
- Clifford's Puppy Days
- Code Lyoko
- Cosmic Cowboys
- Connie The Cow
- Danny Phantom
- Duck Dodgers
- El Cid: The Legend
- The Electric Piper
- The Fight for the FoxBox
- Fireman Sam (HiT Entertainment/Siriol series, released in English in 2005)
- Franny's Feet
- The Frog Show
- Gary the Rat
- Gisaku
- Jacob Two-Two (2003)
- Jakers! The Adventures of Piggley Winks
- JoJo's Circus
- Juro Que Vi (first short released in 2003, others released in 2004, 2006 and 2008)
- Kaput & Zosky
- Kenny the Shark
- King
- The Koala Brothers (2003-2007)
- Lilo & Stitch: The Series
- Stitch! The Movie
- Leroy & Stitch (2006)
- Little Robots
- Lucy Must Be Traded, Charlie Brown
- Martin Morning
- Martin Mystery
- MechaNick
- Milo
- Monkey Dust
- The MusicLand Band
- My Dad the Rock Star
- Poko
- Postcards from Buster (Spin-Off of Arthur)
- Ratz
- Ren & Stimpy "Adult Party Cartoon"
- Rubbadubbers
- Sailor Sid
- The Save-Ums! (2003-2006)
- The Secret World of Benjamin Bear
- Silverwing: Adaptation of the novels.
- The Spaghetti Family
- Spider-Man: The New Animated Series
- Star Wars: Clone Wars (2003)
- Strawberry Shortcake (Classic) (2003-2008)
- Stripperella
- Teen Titans (2003) (2003-2006)
- Teenage Mutant Ninja Turtles
- Teenage Mutant Ninja Turtles (2003) (2003-2009)
- The 3 Wise Men
- A Treasure in My Garden
- Tutenstein
- VBirds
- The Venture Bros.
- Welcome to Tonka Town
- Xiaolin Showdown
- Yakkity Yak
2004
- 6teen (2004-2010)
- Angel Wars
- Atomic Betty
- The Backyardigans
- The Batman (2004)
- Brandy & Mr. Whiskers
- Bro'Town
- Creep School
- Da Boom Crew
- Dave the Barbarian
- Delta State
- Dragon Booster
- The Dragon Series
- Drawn Together
- The Eggs
- El perro y el gato
- Fatherhood
- Father of the Pride
- Foster's Home for Imaginary Friends
- Funpak
- Hair High
- Higglytown Heroes
- Hi Hi Puffy AmiYumi
- The Last of the Mohicans (2004)
- Lily the Witch
- Maya & Miguel
- Megas XLR
- Miss Spider's Sunny Patch Friends
- Nine Dog Christmas
- O'Grady
- Pat & Stan
- Peep and the Big Wide World
- Peppa Pig
- Perfect Hair Forever
- Potatoes and Dragons
- Shadow Of The Elves
- Spookley the Square Pumpkin
- Super Robot Monkey Team Hyperforce Go!
- ToddWorld
- The Tofus
- Tom Goes to the Mayor
- Tripping the Rift
- Trotro
- Tupu
- Villa Dulce
- Watch My Chops (aired in 2003 in most countries)
- Winner and the Golden Child
- Winx Club
- W.I.T.C.H. (2004)
- You Animal!
- Zeroman
2005
- 12 oz. Mouse
- The Adventures of Jeffrey
- The Adventures of Napman
- Alpha Teens on Machines
- Alien Racers
- American Dad!
- American Dragon: Jake Long
- Anabel
- Avatar: The Last Airbender
- BB3B
- Being Ian
- Ben 10
- Ben 10: Alien Force (2008)
- Bird Bath
- The Boondocks
- Brady's Beasts
- Bratz: Based on the toyline.
- Bromwell High
- The Buzz on Maggie
- Camp Lazlo
- Carl²
- Catscratch
- Charlie and Lola: Adaptation of the book series.
- Class of the Titans (2005-2008)
- Coconut Fred's Fruit Salad Island
- Cybertop
- Danger Rangers
- De Avonturen van Varkentje Rund
- Delilah & Julius
- Diego y Glot
- Elias: The Little Rescue Boat
- Fifi and the Flowertots
- Firehouse Tales
- Foot 2 Rue
- Four Eyes!
- Fudêncio e Seus Amigos (2005-2011)
- Gerald McBoing-Boing (2005)
- Gerry Anderson's New Captain Scarlet
- Get Ed
- Go, Diego, Go!
- Harry and His Bucket Full of Dinosaurs
- Here Comes Peter Cottontail: The Movie
- Holly Hobbie and Friends
- Jane and the Dragon
- Jean-Luc & Dondoozat
- Johnny Test
- King Arthur's Disasters
- Krypto the Superdog
- The Legend of Frosty the Snowman
- Legend of the Dragon
- The Life and Times of Juniper Lee
- Little Einsteins
- Loonatics Unleashed
- Meteor and the Mighty Monster Trucks
- Mischief City
- Miss BG
- Moral Orel
- My Gym Partner's a Monkey
- Pet Alien
- Planet Sketch
- Pocoyo
- Los Pulentos
- Razzledazzle
- Robotboy
- Robot Chicken
- Rugrats Pre-School Daze (2005, 2008)
- School for Vampires
- Skyland
- Summerton Mill (as part of Tinkabilla, later broadcast seperately)
- Sons of Butcher
- Squidbillies
- Station X
- Sunday Pants
- Those Scurvy Rascals
- Time Warp Trio
- Toopy and Binoo
- Trollz
- Wapos Bay: The Series
- Willo the Wisp (2005)
- The X's
- Zombie Hotel
- Zula Patrol
2006
- Acquanauti
- Assy McGee
- Avez-vous déjà vu... ?
- Bali
- The Bee-Bees
- Bernard
- Biker Mice from Mars (the 2006 revival)
- Blood Tea and Red String
- Captain Flamingo
- El Chavo Animado
- City Hunters
- Class of 3000
- Curious George. Adaptation of the book series.
- Di-Gata Defenders
- Dogstar
- Didou
- Dragon Hunters
- Edebits
- Ellen's Acres
- The Emperor's New School
- Erky Perky
- Fantastic Four: World's Greatest Heroes
- Forest Friends (2006-2007)
- Freak Show
- Frisky Dingo
- Galactik Football
- Gino il pollo
- Grossology (2006-2009)
- Growing Up Creepie
- Handy Manny
- He's a Bully, Charlie Brown
- Horrid Henry
- Horseland
- I Got a Rocket
- Kappa Mikey
- Legion of Super Heroes
- The Likeaballs
- Little Princess
- Lola & Virginia
- Lunar Jim
- The Many Adventures Of Mr Mailman
- Metalocalypse
- Mickey Mouse Clubhouse
- Minoriteam
- Minuscule
- Monster Allergy. Adaptation of the comic book series.
- MP4orce
- My Goldfish Is Evil!
- The Naughty Naughty Pets
- Numberjacks
- Ōban Star-Racers
- The Owl (2006)
- Ozie Boo!
- Pinky Dinky Doo
- Plastic Man
- Primo
- Purple and Brown
- The Replacements (2006)
- Rintindumb
- Ruby Gloom
- Santapprentice
- The Secret Show
- Shaolin Wuzang
- Shorty McShorts' Shorts
- Shuriken School
- Skatoony
- Sprout Diner
- Squirrel Boy
- Staines Down Drains
- Team Galaxy
- Thugaboo
- The Transporters
- Underground Ernie
- Viva Piñata
- W
- Weird Years (2006-2007)
- What It's Like Being Alone
- Wobbly Land
- Wonder Pets!
- Wow! Wow! Wubbzy!
- Yam Roll
- Yin Yang Yo!
- Zorro: Generation Z
2007
- The Amazing Screw-On Head: Adaptation of the comic book
- Angels of Jarm
- Animalia
- Back at the Barnyard
- The Beeps
- Billy & Mandy’s Big Boogey Adventure
- Bo on the Go!
- Bruno and the Banana Bunch
- Care Bears
- Care Bears: Adventures in Care-a-Lot (2007-2011)
- Chaotic
- Chop Socky Chooks
- Chowder
- Code Monkeys
- Dino Squad
- Edgar & Ellen: Animated adaptation of the literary series.
- Fluffy Gardens
- The Future is Wild
- Futz!
- George of the Jungle (2007)
- GeoTrax
- Gofrette
- Hairy Scary
- Happy Monster Band
- Iggy Arbuckle
- I Met the Walrus
- The Land Before Time (2007)
- The Large Family
- Lil' Bush
- Magi-Nation
- Mama Mirabelle's Home Movies
- My Friend Rabbit (based on the children's books)
- My Friends Tigger & Pooh
- Nocturna
- The Nutshack
- Phineas and Ferb
- Pop Secret
- Revisioned: Tomb Raider Animated Series
- Rick & Steve: The Happiest Gay Couple in All the World
- Ricky Sprocket: Showbiz Boy
- Roary the Racing Car
- Ruby Rocket, Private Detective
- Sea Princesses
- Samsam
- Shaun the Sheep
- Skunk Fu!
- Slacker Cats
- Storm Hawks
- Supernormal
- Super Why!
- Sushi Pack
- Tak and the Power of Juju (2007)
- El Tigre: The Adventures of Manny Rivera
- Time Jam: Valerian & Laureline (2007-2008)
- Tinpo (the original shorts)
- Tommy Zoom
- Total Drama (Island and Action premiered in this decade, the latter in 2009)
- Urban Vermin
- Wayside (pilot aired in 2005)
- Wild West
- Will and Dewitt
- WordGirl
- WordWorld
2008
- 3rd & Bird
- Animal Mechanicals
- Batman: Gotham Knight
- Batman: The Brave and the Bold
- Ben and Holly's Little Kingdom
- Best Ed
- Betsy's Kindergarten Adventures
- Bowlopolis
- The Bremen Avenue Experience
- Calling Cat 22!
- China, IL: The original shorts were released in 2008.
- Chuggington
- Click & Clack's As the Wrench Turns
- Combo Niños
- Dex Hamilton: Alien Entomologist
- Dive Olly Dive!
- The Drinky Crow Show
- Eliot Kid
- Famous 5: On the Case
- Fireman Sam (CGI series, 2008-present)
- Frankenstein's Cat
- Fred's Head
- Freefonix
- Kid vs. Kat
- Kim (2008)
- A Kind of Magic (2008)
- Lifeboat Luke
- Life's a Zoo
- Little Tikes Land
- Making Fiends
- Master Raindrop
- Martha Speaks
- The Marvelous Misadventures of Flapjack
- Matt's Monsters
- The Mighty B!
- The Missing Lynx
- Monster Buster Club
- The Mr. Men Show
- Nacho Bear
- Ni Hao, Kai-Lan
- The Penguins of Madagascar
- Punch!
- Random! Cartoons
- Bravest Warriors (the original pilot; aired in 2009)
- Flavio the Goat (debuted in 2007; aired in 2009)
- Gary Guitar
- Razzberry Jazzberry Jam
- Sammys Story Shop
- The Secret Saturdays
- Shelldon
- Sid the Science Kid
- Spaceballs: The Animated Series
- The Spectacular Spider-Man
- Speed Racer: The Next Generation
- Star Wars: The Clone Wars (2008)
- The Talented Mr. Bixby
- Three Delivery
- Toot & Puddle
- Turbo Dogs
- Wakfu
- Wallace and Gromit in A Matter of Loaf and Death
- Willa's Wild Life
- World of Quest
- Zeke's Pad (debuted in 2008 in Australia; 2010 in Canada)
2009
- The Amazing Spiez!
- Angel's Friends
- Archer
- As Aventuras de Gui & Estopa
- Ballybraddan
- B.F.F. - Best Friends Forever
- Bunny Maloney
- Casper's Scare School
- CJ the DJ
- Clang Invasion
- Clara en Foodland
- The Cleveland Show
- The Daltons
- The Dating Guy
- Dinosaur Train
- Dirtgirlworld
- DJ And The Fro
- Fanboy and Chum Chum
- Fishtronaut
- The Garfield Show
- Gawayn
- Geronimo Stilton (the books' Animated Adaptation debuted in 2009)
- Gladiators: The Tournament of the Seven Wonders
- Glenn Martin, DDS
- Gormiti: The Lords of Nature Return!
- Guess with Jess
- Hot Wheels: Battle Force 5
- Iron Man: Armored Adventures
- Jenny Justice
- Jimmy Two-Shoes
- Jungle Junction
- League of Super Evil
- Monk Little Dog
- My Big, Big Friend
- Olivia
- OOglies
- Pearlie
- Pixel Pinkie
- Poppets Town
- Producing Parker
- RollBots
- Sally Bollywood
- Sandra the Fairy Tale Detective
- Special Agent Oso
- Sit Down, Shut Up
- The Space Place
- Spliced (internationally; did not debut in its native Canada until 2010)
- Stōked
- The Super Hero Squad Show
- Taratabong!
- Timmy Time
- Titan Maximum
- UFO (2009)
- Waybuloo
- Wolverine and the X-Men (2009)
- The WotWots
- Wibbly Pig
From previous decades
- 64 Zoo Lane: Had most of its run in the 2000's
- The Adventures of Paddington Bear (debuted in 1997 and ended in 2000)
- Archibald the Koala (debuted in 1998 and ended in 2000)
- Arthur (started in 1996)
- Arthur's New Friend (2000)
- Arthur's Perfect Christmas (2001)
- Arthur, It's Only Rock 'n' Roll (2002)
- The Avengers: United They Stand (debuted in 1999)
- Bamimation
- Batman Beyond (began in 1999)
- BIONICLE
- Blinky Bill (premiered in 1993, season 3 aired in 2004)
- Blue's Clues (premiered in 1996, ran until 2006)
- Blue's Big Musical Movie (2000)
- Bob the Builder ("Project Build It" premiered in 2005, while "Ready, Steady, Build" premiered in 2009)
- Candy Land: The Great Lollipop Adventure
- Captain Sturdy
- Christmas Carol: The Movie
- Christmas is Here Again
- Constant Payne
- Delgo
- Dexter's Laboratory (ended in 1998, but was revived in 2001 and ran until 2003)
- Dream Street (1999-2002)
- Ed, Edd n Eddy (aired from 1999 to 2009)
- Family Guy (started in 1999, cancelled in 2002, Un-Cancelled in 2005)
- Felix the Cat
- Flipper and Lopaka (1999-2005)
- Futurama (debuted in 1999, but gained most of its following during its 2003-2007 hiatus)
- G.I. Joe
- G.I. Joe: Sigma 6 (2005)
- G.I. Joe: Resolute (2009)
- Headcases
- Hey Arnold! (the last two episodes of Season 4 aired in 2000, and Season 5 aired between 2000 and 2004)
- Il Était Une Fois... (debuted in 1978)
- The Invisible Man
- Johnny Bravo (debuted in 1997)
- Jojo: The Violet Mystery
- King of the Hill (debuted in 1997)
- Korgoth of Barbaria
- The Legend of Sleeping Beauty
- Metajets
- My Little Pony
- Nicktoons Film Festival
- Oggy and the Cockroaches: debuted in 1998, Season 2 aired in 2000, Season 3 aired in 2008.
- Pop Secret
- "Postman Pat": Aired On & Off since 1981, Seasons 3-5 aired between 2004-2007 followed by Season 1 of spin-off series Postman Pat: Special Delivery Service in 2008.
- The Powerpuff Girls (1998) (1998-2005)
- Purno de Purno: Was rebooted in 2006.
- Rocket Power (1999-2004)
- Rugrats (entered the new millennium during Season 6 and aired its ninth and final season between 2002 and 2004)
- Scooby-Doo
- What's New, Scooby-Doo?
- Shaggy & Scooby-Doo Get A Clue!
- Scooby-Doo Direct-to-Video Film Series:
- Scooby-Doo and the Alien Invaders (2000)
- Scooby-Doo and the Cyber Chase (2001)
- Scooby-Doo! and the Legend of the Vampire (2003)
- Scooby-Doo! and the Monster of Mexico (2003)
- Scooby-Doo! and the Loch Ness Monster (2004)
- Aloha, Scooby-Doo! (2005)
- Scooby-Doo! in Where's My Mummy? (2005)
- Scooby Doo! Pirates Ahoy! (2006)
- Chill Out, Scooby-Doo! (2007)
- Scooby-Doo! and the Goblin King (2008)
- Scooby-Doo! and the Samurai Sword (2009)
- The Simpsons (started in 1989)
- The Simpsons Movie (2007)
- South Park (started in 1997)
- SpongeBob SquarePants (debuted in 1999, but didn't muster up even a shadow of the overwhelming world-fame it was about to gain in the 2000s)
- Thomas & Friends (Began releasing a new series every year from 2002, switched to CGI in 2009)
- Tom and Jerry
- Tommy & Oscar
- Toonimals
- Transformers
- 'Twas the Night
- Van Helsing: The London Assignment
- VeggieTales (started in 1993)
